Postprocessing techniques for artery vein separation by segmentation of the entire vessel structures from the background with different approaches.
Phase contrast imaging can also be used to differentiate arteries and veins based on flow-velocity or flow direction. The fact that arterial and venous flows are in opposite directions also has the advantage to separate the vessels in time of flight angiography.

(2D TOF MRA) This form of MR angiography is based on the acquisition of multiple, short-TR, gradient echo single slice images. 2D TOF MRA is the preferred technique for visualizing slow flow, how for example it happens in veins. 2D TOF MRA consists of multiple sequentially-acquired single slices, therefore the saturation effects are minimized.

Motion of material being imaged, particularly flowing blood, can result in many possible effects in the images.
Fast moving blood produces flow voids, blood flowing in to the outer slices of an imaging volume produces high signals (flow related enhancement, entry slice phenomenon), pulsatile flow creates ghost images of the vessel extending across the image in the phase encoding direction (image misregistration).
Flow-related dephasing occurring when spin isochromats are moving with different velocities in an external gradient field G so that they acquire different phases. When these phases vary by more then 180° within a voxel, substantial spin dephasing results leading to considerable intravascular signal loss.
These effects can be understood as caused by time of flight effects (washout or washin due to motion of nuclei between two consecutive spatially selective RF excitations, repeated in times on the order of, or shorter than the relaxation times of blood) or phase shifts (delay between phase encoding and frequency encoding) that can be acquired by excited spins moving along magnetic field gradients.
The inconsistency of the signal resulting from pulsatile flow can lead to artifacts in the image. The flow effects can also be exploited for MR angiography or flow measurements.

See also Flow Artifact.